NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
848.5 |
| Mean read quality |
12.4 |
| Median read length |
512.0 |
| Median read quality |
13.1 |
| Number of reads |
127,451.0 |
| Read length N50 |
1,280.0 |
| STDEV read length |
998.0 |
| Total bases |
108,145,972.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
127451 (100.0%) 108.1Mb |
| >Q7 |
127451 (100.0%) 108.1Mb |
| >Q10 |
127442 (100.0%) 108.1Mb |
| >Q12 |
92466 (72.6%) 81.4Mb |
| >Q15 |
23340 (18.3%) 28.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
22.1 (757) |
| 2 |
21.1 (1825) |
| 3 |
20.9 (2491) |
| 4 |
20.7 (943) |
| 5 |
20.7 (712) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
26345 (12.5) |
| 2 |
26197 (13.1) |
| 3 |
22516 (11.2) |
| 4 |
22516 (11.6) |
| 5 |
19198 (12.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot