NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
604.4 |
| Mean read quality |
11.6 |
| Median read length |
324.0 |
| Median read quality |
12.4 |
| Number of reads |
1,237.0 |
| Read length N50 |
935.0 |
| STDEV read length |
795.6 |
| Total bases |
747,632.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1237 (100.0%) 0.7Mb |
| >Q7 |
1236 (99.9%) 0.7Mb |
| >Q10 |
1121 (90.6%) 0.7Mb |
| >Q12 |
710 (57.4%) 0.5Mb |
| >Q15 |
161 (13.0%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.0 (922) |
| 2 |
18.6 (626) |
| 3 |
18.3 (695) |
| 4 |
18.2 (834) |
| 5 |
18.0 (327) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10565 (13.7) |
| 2 |
9305 (10.1) |
| 3 |
7154 (10.3) |
| 4 |
6354 (12.0) |
| 5 |
6108 (11.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot