NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,235.2 |
| Mean read quality |
12.3 |
| Median read length |
829.0 |
| Median read quality |
13.3 |
| Number of reads |
40,384.0 |
| Read length N50 |
1,842.0 |
| STDEV read length |
1,248.4 |
| Total bases |
49,883,759.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
40384 (100.0%) 49.9Mb |
| >Q7 |
40380 (100.0%) 49.9Mb |
| >Q10 |
38436 (95.2%) 47.3Mb |
| >Q12 |
29602 (73.3%) 36.2Mb |
| >Q15 |
7644 (18.9%) 11.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.7 (429) |
| 2 |
20.0 (635) |
| 3 |
20.0 (637) |
| 4 |
19.9 (423) |
| 5 |
19.4 (647) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
25369 (10.5) |
| 2 |
22814 (15.0) |
| 3 |
19283 (11.2) |
| 4 |
18299 (12.9) |
| 5 |
16968 (10.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot