NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,766.3 |
| Mean read quality |
12.6 |
| Median read length |
1,161.0 |
| Median read quality |
13.6 |
| Number of reads |
200,004.0 |
| Read length N50 |
2,716.0 |
| STDEV read length |
1,858.2 |
| Total bases |
353,263,021.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
200004 (100.0%) 353.3Mb |
| >Q7 |
199993 (100.0%) 353.3Mb |
| >Q10 |
193924 (97.0%) 344.1Mb |
| >Q12 |
154107 (77.1%) 268.2Mb |
| >Q15 |
45848 (22.9%) 90.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.3 (580) |
| 2 |
21.1 (1429) |
| 3 |
21.1 (2586) |
| 4 |
20.8 (3502) |
| 5 |
20.3 (1199) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
46230 (12.5) |
| 2 |
39694 (11.9) |
| 3 |
33029 (11.8) |
| 4 |
32628 (14.3) |
| 5 |
31685 (12.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot