NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,396.8 |
| Mean read quality |
12.2 |
| Median read length |
905.0 |
| Median read quality |
13.2 |
| Number of reads |
20,662.0 |
| Read length N50 |
2,172.0 |
| STDEV read length |
1,502.3 |
| Total bases |
28,861,395.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
20662 (100.0%) 28.9Mb |
| >Q7 |
20662 (100.0%) 28.9Mb |
| >Q10 |
19174 (92.8%) 26.5Mb |
| >Q12 |
13939 (67.5%) 18.3Mb |
| >Q15 |
4961 (24.0%) 6.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
24.5 (702) |
| 2 |
22.0 (343) |
| 3 |
21.9 (594) |
| 4 |
21.8 (487) |
| 5 |
21.8 (322) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
25251 (15.1) |
| 2 |
23245 (13.8) |
| 3 |
22979 (10.5) |
| 4 |
17970 (13.0) |
| 5 |
17601 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot