NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,474.7 |
| Mean read quality |
12.4 |
| Median read length |
890.0 |
| Median read quality |
13.4 |
| Number of reads |
40,143.0 |
| Read length N50 |
2,450.0 |
| STDEV read length |
1,732.7 |
| Total bases |
59,199,747.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
40143 (100.0%) 59.2Mb |
| >Q7 |
40142 (100.0%) 59.2Mb |
| >Q10 |
37886 (94.4%) 55.7Mb |
| >Q12 |
28009 (69.8%) 37.6Mb |
| >Q15 |
11715 (29.2%) 12.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
25.2 (1032) |
| 2 |
25.0 (346) |
| 3 |
24.5 (229) |
| 4 |
24.5 (405) |
| 5 |
24.2 (455) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
39457 (12.0) |
| 2 |
37529 (11.3) |
| 3 |
36196 (11.1) |
| 4 |
35638 (11.8) |
| 5 |
31920 (12.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot