NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,286.1 |
| Mean read quality |
12.4 |
| Median read length |
798.0 |
| Median read quality |
13.5 |
| Number of reads |
38,555.0 |
| Read length N50 |
2,064.0 |
| STDEV read length |
1,434.7 |
| Total bases |
49,586,736.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
38555 (100.0%) 49.6Mb |
| >Q7 |
38555 (100.0%) 49.6Mb |
| >Q10 |
36340 (94.3%) 46.6Mb |
| >Q12 |
27126 (70.4%) 32.6Mb |
| >Q15 |
11490 (29.8%) 12.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
25.9 (239) |
| 2 |
25.8 (232) |
| 3 |
24.0 (229) |
| 4 |
23.9 (269) |
| 5 |
23.8 (366) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
24747 (9.8) |
| 2 |
21482 (11.8) |
| 3 |
20730 (14.8) |
| 4 |
17580 (16.1) |
| 5 |
16637 (9.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot