NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,119.9 |
| Mean read quality |
12.6 |
| Median read length |
768.0 |
| Median read quality |
13.7 |
| Number of reads |
44,779.0 |
| Read length N50 |
1,626.0 |
| STDEV read length |
1,097.6 |
| Total bases |
50,148,982.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
44779 (100.0%) 50.1Mb |
| >Q7 |
44779 (100.0%) 50.1Mb |
| >Q10 |
42556 (95.0%) 47.6Mb |
| >Q12 |
32815 (73.3%) 34.9Mb |
| >Q15 |
14593 (32.6%) 14.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
25.8 (331) |
| 2 |
25.2 (255) |
| 3 |
24.6 (398) |
| 4 |
23.9 (250) |
| 5 |
23.9 (365) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
21492 (10.7) |
| 2 |
19805 (12.1) |
| 3 |
15549 (13.2) |
| 4 |
15374 (12.0) |
| 5 |
14843 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot