NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,594.4 |
| Mean read quality |
12.3 |
| Median read length |
947.0 |
| Median read quality |
13.4 |
| Number of reads |
56,735.0 |
| Read length N50 |
2,698.0 |
| STDEV read length |
1,883.8 |
| Total bases |
90,458,603.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
56735 (100.0%) 90.5Mb |
| >Q7 |
56734 (100.0%) 90.5Mb |
| >Q10 |
53112 (93.6%) 84.1Mb |
| >Q12 |
39283 (69.2%) 56.9Mb |
| >Q15 |
15809 (27.9%) 19.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
25.6 (317) |
| 2 |
25.0 (202) |
| 3 |
24.8 (228) |
| 4 |
24.0 (305) |
| 5 |
23.9 (268) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
31200 (13.4) |
| 2 |
31063 (10.7) |
| 3 |
30277 (12.3) |
| 4 |
27295 (15.3) |
| 5 |
27039 (14.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot