NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,257.7 |
| Mean read quality |
12.3 |
| Median read length |
767.0 |
| Median read quality |
13.3 |
| Number of reads |
30,453.0 |
| Read length N50 |
2,034.0 |
| STDEV read length |
1,412.7 |
| Total bases |
38,302,180.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
30453 (100.0%) 38.3Mb |
| >Q7 |
30453 (100.0%) 38.3Mb |
| >Q10 |
27918 (91.7%) 34.7Mb |
| >Q12 |
20596 (67.6%) 24.2Mb |
| >Q15 |
8457 (27.8%) 8.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
27.9 (211) |
| 2 |
24.4 (343) |
| 3 |
24.3 (208) |
| 4 |
23.6 (202) |
| 5 |
23.4 (279) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
20896 (14.1) |
| 2 |
20254 (13.3) |
| 3 |
19319 (13.1) |
| 4 |
18342 (9.9) |
| 5 |
18156 (13.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot