NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,626.5 |
| Mean read quality |
12.6 |
| Median read length |
905.0 |
| Median read quality |
13.7 |
| Number of reads |
100,383.0 |
| Read length N50 |
2,891.0 |
| STDEV read length |
2,052.0 |
| Total bases |
163,271,088.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
100383 (100.0%) 163.3Mb |
| >Q7 |
100383 (100.0%) 163.3Mb |
| >Q10 |
93931 (93.6%) 150.6Mb |
| >Q12 |
73128 (72.8%) 108.8Mb |
| >Q15 |
32470 (32.3%) 41.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
28.5 (284) |
| 2 |
28.1 (285) |
| 3 |
27.7 (303) |
| 4 |
27.1 (633) |
| 5 |
26.1 (363) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
45165 (12.1) |
| 2 |
41260 (11.6) |
| 3 |
38345 (9.9) |
| 4 |
34752 (12.4) |
| 5 |
31597 (11.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot