NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,460.9 |
| Mean read quality |
13.0 |
| Median read length |
932.0 |
| Median read quality |
14.0 |
| Number of reads |
291,913.0 |
| Read length N50 |
2,305.0 |
| STDEV read length |
1,582.3 |
| Total bases |
426,455,917.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
291913 (100.0%) 426.5Mb |
| >Q7 |
291913 (100.0%) 426.5Mb |
| >Q10 |
291886 (100.0%) 426.4Mb |
| >Q12 |
235772 (80.8%) 339.9Mb |
| >Q15 |
92895 (31.8%) 155.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
22.7 (3091) |
| 2 |
21.6 (1998) |
| 3 |
21.4 (438) |
| 4 |
21.3 (1714) |
| 5 |
21.3 (1257) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
38634 (10.4) |
| 2 |
37326 (11.9) |
| 3 |
35856 (12.6) |
| 4 |
28739 (10.5) |
| 5 |
28161 (16.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot