NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
284.8 |
| Mean read quality |
11.6 |
| Median read length |
215.0 |
| Median read quality |
12.1 |
| Number of reads |
5,739.0 |
| Read length N50 |
267.0 |
| STDEV read length |
227.1 |
| Total bases |
1,634,556.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
5739 (100.0%) 1.6Mb |
| >Q7 |
5739 (100.0%) 1.6Mb |
| >Q10 |
5739 (100.0%) 1.6Mb |
| >Q12 |
2991 (52.1%) 1.0Mb |
| >Q15 |
269 (4.7%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.6 (498) |
| 2 |
19.2 (310) |
| 3 |
18.3 (1195) |
| 4 |
18.0 (762) |
| 5 |
17.8 (674) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6605 (11.1) |
| 2 |
2783 (12.6) |
| 3 |
2756 (17.3) |
| 4 |
2735 (14.3) |
| 5 |
2546 (10.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot