NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
977.3 |
| Mean read quality |
11.3 |
| Median read length |
646.5 |
| Median read quality |
11.7 |
| Number of reads |
164.0 |
| Read length N50 |
1,302.0 |
| STDEV read length |
981.2 |
| Total bases |
160,281.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
164 (100.0%) 0.2Mb |
| >Q7 |
164 (100.0%) 0.2Mb |
| >Q10 |
164 (100.0%) 0.2Mb |
| >Q12 |
69 (42.1%) 0.1Mb |
| >Q15 |
3 (1.8%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.5 (620) |
| 2 |
15.4 (427) |
| 3 |
15.2 (940) |
| 4 |
14.7 (400) |
| 5 |
14.5 (854) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8002 (12.2) |
| 2 |
6179 (13.7) |
| 3 |
4993 (11.2) |
| 4 |
4350 (12.6) |
| 5 |
2697 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot