NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,046.3 |
| Mean read quality |
11.7 |
| Median read length |
628.0 |
| Median read quality |
12.3 |
| Number of reads |
69.0 |
| Read length N50 |
1,531.0 |
| STDEV read length |
1,090.8 |
| Total bases |
72,198.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
69 (100.0%) 0.1Mb |
| >Q7 |
69 (100.0%) 0.1Mb |
| >Q10 |
69 (100.0%) 0.1Mb |
| >Q12 |
39 (56.5%) 0.0Mb |
| >Q15 |
4 (5.8%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (421) |
| 2 |
16.5 (1015) |
| 3 |
15.5 (1447) |
| 4 |
15.0 (1732) |
| 5 |
14.8 (478) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5829 (10.6) |
| 2 |
4580 (11.4) |
| 3 |
3786 (12.6) |
| 4 |
3709 (12.2) |
| 5 |
3706 (13.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot