NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
258.8 |
| Mean read quality |
10.6 |
| Median read length |
227.0 |
| Median read quality |
11.3 |
| Number of reads |
3,432.0 |
| Read length N50 |
232.0 |
| STDEV read length |
216.0 |
| Total bases |
888,113.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3432 (100.0%) 0.9Mb |
| >Q7 |
3432 (100.0%) 0.9Mb |
| >Q10 |
2819 (82.1%) 0.7Mb |
| >Q12 |
1075 (31.3%) 0.3Mb |
| >Q15 |
17 (0.5%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (224) |
| 2 |
16.2 (228) |
| 3 |
15.9 (236) |
| 4 |
15.9 (230) |
| 5 |
15.7 (224) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4988 (13.2) |
| 2 |
3826 (11.1) |
| 3 |
3447 (12.5) |
| 4 |
3348 (12.5) |
| 5 |
3169 (10.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot