NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
232.9 |
| Mean read quality |
10.9 |
| Median read length |
214.0 |
| Median read quality |
11.5 |
| Number of reads |
1,858.0 |
| Read length N50 |
216.0 |
| STDEV read length |
118.4 |
| Total bases |
432,738.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1858 (100.0%) 0.4Mb |
| >Q7 |
1858 (100.0%) 0.4Mb |
| >Q10 |
1618 (87.1%) 0.4Mb |
| >Q12 |
695 (37.4%) 0.2Mb |
| >Q15 |
29 (1.6%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (210) |
| 2 |
17.1 (1512) |
| 3 |
17.0 (216) |
| 4 |
16.8 (212) |
| 5 |
16.3 (819) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2852 (11.6) |
| 2 |
2226 (11.0) |
| 3 |
2075 (13.1) |
| 4 |
1512 (17.1) |
| 5 |
1338 (13.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot