NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
304.9 |
| Mean read quality |
10.9 |
| Median read length |
222.0 |
| Median read quality |
11.6 |
| Number of reads |
3,715.0 |
| Read length N50 |
232.0 |
| STDEV read length |
566.1 |
| Total bases |
1,132,779.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3714 (100.0%) 1.1Mb |
| >Q7 |
3713 (99.9%) 1.1Mb |
| >Q10 |
3282 (88.3%) 1.0Mb |
| >Q12 |
1475 (39.7%) 0.5Mb |
| >Q15 |
60 (1.6%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.2 (205) |
| 2 |
16.9 (13294) |
| 3 |
16.4 (249) |
| 4 |
16.3 (214) |
| 5 |
16.2 (3294) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
15198 (11.7) |
| 2 |
13294 (16.9) |
| 3 |
9064 (12.8) |
| 4 |
7972 (10.9) |
| 5 |
6809 (14.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot