NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
869.7 |
| Mean read quality |
11.3 |
| Median read length |
496.0 |
| Median read quality |
12.0 |
| Number of reads |
209.0 |
| Read length N50 |
1,411.0 |
| STDEV read length |
1,014.2 |
| Total bases |
181,763.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
209 (100.0%) 0.2Mb |
| >Q7 |
209 (100.0%) 0.2Mb |
| >Q10 |
182 (87.1%) 0.2Mb |
| >Q12 |
108 (51.7%) 0.1Mb |
| >Q15 |
35 (16.7%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.0 (208) |
| 2 |
18.2 (434) |
| 3 |
17.7 (599) |
| 4 |
17.4 (517) |
| 5 |
17.3 (3703) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6649 (14.9) |
| 2 |
5611 (12.9) |
| 3 |
4988 (14.2) |
| 4 |
4592 (10.9) |
| 5 |
4138 (16.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot