NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
841.7 |
| Mean read quality |
11.3 |
| Median read length |
502.5 |
| Median read quality |
11.7 |
| Number of reads |
1,540.0 |
| Read length N50 |
1,264.0 |
| STDEV read length |
938.8 |
| Total bases |
1,296,273.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1540 (100.0%) 1.3Mb |
| >Q7 |
1540 (100.0%) 1.3Mb |
| >Q10 |
1540 (100.0%) 1.3Mb |
| >Q12 |
642 (41.7%) 0.6Mb |
| >Q15 |
31 (2.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (1899) |
| 2 |
16.1 (371) |
| 3 |
16.1 (253) |
| 4 |
16.1 (278) |
| 5 |
16.0 (491) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9531 (13.7) |
| 2 |
8756 (10.1) |
| 3 |
8690 (11.9) |
| 4 |
7678 (12.5) |
| 5 |
6540 (12.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot