NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,348.7 |
| Mean read quality |
11.6 |
| Median read length |
910.0 |
| Median read quality |
12.2 |
| Number of reads |
75,854.0 |
| Read length N50 |
1,931.0 |
| STDEV read length |
1,368.5 |
| Total bases |
102,304,274.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
75854 (100.0%) 102.3Mb |
| >Q7 |
75854 (100.0%) 102.3Mb |
| >Q10 |
75838 (100.0%) 102.3Mb |
| >Q12 |
41514 (54.7%) 56.3Mb |
| >Q15 |
3612 (4.8%) 5.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.2 (890) |
| 2 |
18.9 (1454) |
| 3 |
18.9 (1641) |
| 4 |
18.8 (1915) |
| 5 |
18.6 (1814) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
25160 (12.0) |
| 2 |
22834 (11.6) |
| 3 |
22640 (12.3) |
| 4 |
22013 (12.3) |
| 5 |
20620 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot