NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,432.5 |
| Mean read quality |
11.6 |
| Median read length |
960.0 |
| Median read quality |
12.1 |
| Number of reads |
105,039.0 |
| Read length N50 |
2,076.0 |
| STDEV read length |
1,470.7 |
| Total bases |
150,467,900.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
105039 (100.0%) 150.5Mb |
| >Q7 |
105039 (100.0%) 150.5Mb |
| >Q10 |
105023 (100.0%) 150.4Mb |
| >Q12 |
55269 (52.6%) 81.3Mb |
| >Q15 |
3552 (3.4%) 5.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.0 (1194) |
| 2 |
18.7 (1821) |
| 3 |
18.7 (1027) |
| 4 |
18.6 (1715) |
| 5 |
18.6 (936) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
43586 (11.0) |
| 2 |
32781 (14.1) |
| 3 |
30970 (11.9) |
| 4 |
27274 (11.9) |
| 5 |
27255 (13.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot