NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,048.5 |
| Mean read quality |
11.3 |
| Median read length |
735.0 |
| Median read quality |
11.8 |
| Number of reads |
5,577.0 |
| Read length N50 |
1,427.0 |
| STDEV read length |
1,006.2 |
| Total bases |
5,847,524.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
5577 (100.0%) 5.8Mb |
| >Q7 |
5577 (100.0%) 5.8Mb |
| >Q10 |
5575 (100.0%) 5.8Mb |
| >Q12 |
2530 (45.4%) 2.7Mb |
| >Q15 |
124 (2.2%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.4 (1270) |
| 2 |
17.9 (1047) |
| 3 |
17.5 (1938) |
| 4 |
17.0 (696) |
| 5 |
16.9 (363) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11445 (10.4) |
| 2 |
11135 (10.5) |
| 3 |
11112 (13.2) |
| 4 |
10499 (10.4) |
| 5 |
9863 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot