NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,225.6 |
| Mean read quality |
11.5 |
| Median read length |
827.5 |
| Median read quality |
12.1 |
| Number of reads |
10,570.0 |
| Read length N50 |
1,740.0 |
| STDEV read length |
1,254.6 |
| Total bases |
12,954,740.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
10570 (100.0%) 13.0Mb |
| >Q7 |
10570 (100.0%) 13.0Mb |
| >Q10 |
10568 (100.0%) 13.0Mb |
| >Q12 |
5446 (51.5%) 6.5Mb |
| >Q15 |
473 (4.5%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.2 (2106) |
| 2 |
18.1 (877) |
| 3 |
17.8 (1533) |
| 4 |
17.7 (1266) |
| 5 |
17.6 (2912) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
17803 (10.7) |
| 2 |
16621 (11.2) |
| 3 |
16048 (10.3) |
| 4 |
16038 (10.1) |
| 5 |
15643 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot