NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
91.4 |
| Mean read quality |
19.6 |
| Median read length |
60.0 |
| Median read quality |
23.9 |
| Number of reads |
303.0 |
| Read length N50 |
120.0 |
| STDEV read length |
77.1 |
| Total bases |
27,692.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
303 (100.0%) 0.0Mb |
| >Q7 |
303 (100.0%) 0.0Mb |
| >Q10 |
303 (100.0%) 0.0Mb |
| >Q12 |
300 (99.0%) 0.0Mb |
| >Q15 |
280 (92.4%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
42.8 (56) |
| 2 |
41.2 (61) |
| 3 |
40.7 (49) |
| 4 |
40.5 (49) |
| 5 |
39.3 (46) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
540 (23.2) |
| 2 |
436 (24.7) |
| 3 |
425 (18.3) |
| 4 |
386 (20.2) |
| 5 |
362 (27.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot