NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
77.2 |
| Mean read quality |
19.7 |
| Median read length |
64.0 |
| Median read quality |
24.6 |
| Number of reads |
224.0 |
| Read length N50 |
80.0 |
| STDEV read length |
49.6 |
| Total bases |
17,300.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
224 (100.0%) 0.0Mb |
| >Q7 |
224 (100.0%) 0.0Mb |
| >Q10 |
223 (99.6%) 0.0Mb |
| >Q12 |
222 (99.1%) 0.0Mb |
| >Q15 |
206 (92.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
42.3 (46) |
| 2 |
41.7 (46) |
| 3 |
40.7 (73) |
| 4 |
40.0 (64) |
| 5 |
39.8 (44) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
428 (20.8) |
| 2 |
388 (25.0) |
| 3 |
256 (16.1) |
| 4 |
235 (33.5) |
| 5 |
232 (22.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot