NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
56.4 |
| Mean read quality |
19.1 |
| Median read length |
47.0 |
| Median read quality |
27.4 |
| Number of reads |
37.0 |
| Read length N50 |
54.0 |
| STDEV read length |
48.5 |
| Total bases |
2,087.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
37 (100.0%) 0.0Mb |
| >Q7 |
37 (100.0%) 0.0Mb |
| >Q10 |
37 (100.0%) 0.0Mb |
| >Q12 |
35 (94.6%) 0.0Mb |
| >Q15 |
34 (91.9%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.8 (32) |
| 2 |
41.3 (49) |
| 3 |
36.4 (32) |
| 4 |
35.7 (60) |
| 5 |
35.0 (42) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
317 (15.0) |
| 2 |
121 (24.5) |
| 3 |
109 (28.4) |
| 4 |
96 (30.6) |
| 5 |
74 (25.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot