NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
119.4 |
| Mean read quality |
19.5 |
| Median read length |
71.0 |
| Median read quality |
24.6 |
| Number of reads |
2,572.0 |
| Read length N50 |
161.0 |
| STDEV read length |
142.8 |
| Total bases |
307,131.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2572 (100.0%) 0.3Mb |
| >Q7 |
2572 (100.0%) 0.3Mb |
| >Q10 |
2568 (99.8%) 0.3Mb |
| >Q12 |
2531 (98.4%) 0.3Mb |
| >Q15 |
2359 (91.7%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
43.9 (29) |
| 2 |
42.3 (49) |
| 3 |
42.3 (43) |
| 4 |
42.3 (53) |
| 5 |
42.1 (80) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1896 (20.9) |
| 2 |
1820 (19.7) |
| 3 |
1606 (24.2) |
| 4 |
1224 (21.4) |
| 5 |
1221 (23.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot