NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
100.3 |
| Mean read quality |
19.2 |
| Median read length |
77.0 |
| Median read quality |
24.1 |
| Number of reads |
45.0 |
| Read length N50 |
117.0 |
| STDEV read length |
77.0 |
| Total bases |
4,513.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
45 (100.0%) 0.0Mb |
| >Q7 |
45 (100.0%) 0.0Mb |
| >Q10 |
45 (100.0%) 0.0Mb |
| >Q12 |
45 (100.0%) 0.0Mb |
| >Q15 |
39 (86.7%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
37.8 (88) |
| 2 |
37.3 (56) |
| 3 |
37.0 (35) |
| 4 |
35.5 (46) |
| 5 |
34.6 (50) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
428 (28.8) |
| 2 |
328 (18.2) |
| 3 |
264 (20.7) |
| 4 |
217 (25.0) |
| 5 |
169 (27.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot