NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
112.8 |
| Mean read quality |
22.4 |
| Median read length |
84.5 |
| Median read quality |
26.8 |
| Number of reads |
12.0 |
| Read length N50 |
123.0 |
| STDEV read length |
67.7 |
| Total bases |
1,354.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
12 (100.0%) 0.0Mb |
| >Q7 |
12 (100.0%) 0.0Mb |
| >Q10 |
12 (100.0%) 0.0Mb |
| >Q12 |
12 (100.0%) 0.0Mb |
| >Q15 |
12 (100.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
35.9 (72) |
| 2 |
35.7 (53) |
| 3 |
35.0 (68) |
| 4 |
34.1 (304) |
| 5 |
29.1 (120) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
304 (34.1) |
| 2 |
174 (23.9) |
| 3 |
142 (27.8) |
| 4 |
123 (16.6) |
| 5 |
120 (29.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot