NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
87.0 |
| Mean read quality |
19.8 |
| Median read length |
70.0 |
| Median read quality |
26.1 |
| Number of reads |
1,879.0 |
| Read length N50 |
91.0 |
| STDEV read length |
53.7 |
| Total bases |
163,498.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1879 (100.0%) 0.2Mb |
| >Q7 |
1879 (100.0%) 0.2Mb |
| >Q10 |
1873 (99.7%) 0.2Mb |
| >Q12 |
1849 (98.4%) 0.2Mb |
| >Q15 |
1726 (91.9%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
44.4 (64) |
| 2 |
42.1 (62) |
| 3 |
41.3 (81) |
| 4 |
40.9 (63) |
| 5 |
40.7 (105) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
539 (24.0) |
| 2 |
514 (24.7) |
| 3 |
501 (23.9) |
| 4 |
490 (24.2) |
| 5 |
461 (18.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot