NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
111.1 |
| Mean read quality |
20.3 |
| Median read length |
86.0 |
| Median read quality |
26.2 |
| Number of reads |
217.0 |
| Read length N50 |
127.0 |
| STDEV read length |
87.4 |
| Total bases |
24,104.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
217 (100.0%) 0.0Mb |
| >Q7 |
217 (100.0%) 0.0Mb |
| >Q10 |
216 (99.5%) 0.0Mb |
| >Q12 |
215 (99.1%) 0.0Mb |
| >Q15 |
204 (94.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
42.7 (70) |
| 2 |
41.6 (75) |
| 3 |
39.0 (72) |
| 4 |
38.8 (127) |
| 5 |
37.7 (165) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
784 (19.7) |
| 2 |
478 (22.2) |
| 3 |
466 (29.9) |
| 4 |
373 (21.1) |
| 5 |
346 (28.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot