NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
98.9 |
| Mean read quality |
20.1 |
| Median read length |
82.0 |
| Median read quality |
25.5 |
| Number of reads |
839.0 |
| Read length N50 |
110.0 |
| STDEV read length |
56.1 |
| Total bases |
83,010.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
839 (100.0%) 0.1Mb |
| >Q7 |
839 (100.0%) 0.1Mb |
| >Q10 |
839 (100.0%) 0.1Mb |
| >Q12 |
835 (99.5%) 0.1Mb |
| >Q15 |
776 (92.5%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
43.6 (74) |
| 2 |
43.0 (37) |
| 3 |
42.7 (40) |
| 4 |
42.2 (73) |
| 5 |
41.6 (103) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
431 (28.9) |
| 2 |
411 (30.2) |
| 3 |
361 (20.6) |
| 4 |
361 (18.4) |
| 5 |
355 (15.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot