NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
79.8 |
| Mean read quality |
19.2 |
| Median read length |
63.0 |
| Median read quality |
24.7 |
| Number of reads |
1,426.0 |
| Read length N50 |
85.0 |
| STDEV read length |
53.6 |
| Total bases |
113,729.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1426 (100.0%) 0.1Mb |
| >Q7 |
1426 (100.0%) 0.1Mb |
| >Q10 |
1424 (99.9%) 0.1Mb |
| >Q12 |
1398 (98.0%) 0.1Mb |
| >Q15 |
1285 (90.1%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
44.2 (29) |
| 2 |
43.7 (54) |
| 3 |
43.5 (47) |
| 4 |
43.0 (46) |
| 5 |
42.9 (83) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
548 (19.9) |
| 2 |
464 (18.0) |
| 3 |
456 (20.1) |
| 4 |
451 (25.2) |
| 5 |
432 (17.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot