NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
63.9 |
| Mean read quality |
18.7 |
| Median read length |
57.5 |
| Median read quality |
24.7 |
| Number of reads |
56.0 |
| Read length N50 |
64.0 |
| STDEV read length |
29.9 |
| Total bases |
3,578.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
56 (100.0%) 0.0Mb |
| >Q7 |
56 (100.0%) 0.0Mb |
| >Q10 |
55 (98.2%) 0.0Mb |
| >Q12 |
54 (96.4%) 0.0Mb |
| >Q15 |
51 (91.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
36.2 (34) |
| 2 |
35.2 (45) |
| 3 |
35.0 (30) |
| 4 |
34.8 (40) |
| 5 |
34.6 (50) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
222 (22.6) |
| 2 |
165 (28.4) |
| 3 |
112 (30.8) |
| 4 |
96 (16.1) |
| 5 |
87 (18.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot