NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
123.1 |
| Mean read quality |
19.9 |
| Median read length |
68.0 |
| Median read quality |
26.5 |
| Number of reads |
43.0 |
| Read length N50 |
200.0 |
| STDEV read length |
160.0 |
| Total bases |
5,295.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
43 (100.0%) 0.0Mb |
| >Q7 |
43 (100.0%) 0.0Mb |
| >Q10 |
43 (100.0%) 0.0Mb |
| >Q12 |
43 (100.0%) 0.0Mb |
| >Q15 |
41 (95.3%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
38.7 (35) |
| 2 |
35.8 (38) |
| 3 |
35.4 (58) |
| 4 |
33.9 (40) |
| 5 |
33.1 (219) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
913 (15.6) |
| 2 |
627 (21.9) |
| 3 |
302 (19.1) |
| 4 |
278 (18.2) |
| 5 |
229 (26.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot