NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
81.5 |
| Mean read quality |
19.9 |
| Median read length |
63.0 |
| Median read quality |
26.2 |
| Number of reads |
6,489.0 |
| Read length N50 |
88.0 |
| STDEV read length |
64.2 |
| Total bases |
529,034.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
6489 (100.0%) 0.5Mb |
| >Q7 |
6489 (100.0%) 0.5Mb |
| >Q10 |
6479 (99.8%) 0.5Mb |
| >Q12 |
6401 (98.6%) 0.5Mb |
| >Q15 |
5986 (92.2%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
44.9 (31) |
| 2 |
44.1 (37) |
| 3 |
43.8 (33) |
| 4 |
43.7 (42) |
| 5 |
43.6 (41) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1457 (15.5) |
| 2 |
1048 (26.5) |
| 3 |
918 (19.3) |
| 4 |
807 (23.6) |
| 5 |
801 (20.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot