NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
324.0 |
| Mean read quality |
15.0 |
| Median read length |
252.0 |
| Median read quality |
16.2 |
| Number of reads |
158,268.0 |
| Read length N50 |
323.0 |
| STDEV read length |
182.3 |
| Total bases |
51,279,946.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
158268 (100.0%) 51.3Mb |
| >Q7 |
158268 (100.0%) 51.3Mb |
| >Q10 |
158114 (99.9%) 51.2Mb |
| >Q12 |
147527 (93.2%) 47.0Mb |
| >Q15 |
101879 (64.4%) 30.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
43.5 (303) |
| 2 |
42.6 (169) |
| 3 |
42.4 (198) |
| 4 |
41.5 (205) |
| 5 |
41.2 (170) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3768 (13.7) |
| 2 |
3703 (11.7) |
| 3 |
3385 (13.3) |
| 4 |
3092 (15.8) |
| 5 |
2986 (14.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot