NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
252.0 |
| Mean read quality |
15.2 |
| Median read length |
235.0 |
| Median read quality |
16.4 |
| Number of reads |
11,847.0 |
| Read length N50 |
239.0 |
| STDEV read length |
84.9 |
| Total bases |
2,985,361.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
11847 (100.0%) 3.0Mb |
| >Q7 |
11847 (100.0%) 3.0Mb |
| >Q10 |
11827 (99.8%) 3.0Mb |
| >Q12 |
11255 (95.0%) 2.8Mb |
| >Q15 |
8062 (68.1%) 2.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
39.1 (191) |
| 2 |
37.5 (231) |
| 3 |
37.3 (235) |
| 4 |
36.8 (247) |
| 5 |
36.1 (119) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2209 (13.1) |
| 2 |
1626 (11.8) |
| 3 |
1545 (12.9) |
| 4 |
1280 (12.7) |
| 5 |
1274 (11.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot