NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
306.9 |
| Mean read quality |
15.4 |
| Median read length |
231.0 |
| Median read quality |
16.6 |
| Number of reads |
184,041.0 |
| Read length N50 |
331.0 |
| STDEV read length |
171.1 |
| Total bases |
56,480,579.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
184041 (100.0%) 56.5Mb |
| >Q7 |
184039 (100.0%) 56.5Mb |
| >Q10 |
183866 (99.9%) 56.4Mb |
| >Q12 |
174283 (94.7%) 52.9Mb |
| >Q15 |
127405 (69.2%) 36.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.4 (189) |
| 2 |
40.3 (206) |
| 3 |
40.2 (66) |
| 4 |
40.2 (71) |
| 5 |
40.2 (244) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3441 (14.4) |
| 2 |
3236 (17.1) |
| 3 |
3215 (12.3) |
| 4 |
3031 (12.2) |
| 5 |
2645 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot