NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
244.0 |
| Mean read quality |
15.1 |
| Median read length |
245.0 |
| Median read quality |
16.4 |
| Number of reads |
10,180.0 |
| Read length N50 |
250.0 |
| STDEV read length |
93.6 |
| Total bases |
2,483,988.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
10180 (100.0%) 2.5Mb |
| >Q7 |
10180 (100.0%) 2.5Mb |
| >Q10 |
10172 (99.9%) 2.5Mb |
| >Q12 |
9574 (94.0%) 2.3Mb |
| >Q15 |
6683 (65.6%) 1.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
36.8 (217) |
| 2 |
36.6 (227) |
| 3 |
35.4 (217) |
| 4 |
35.1 (177) |
| 5 |
35.1 (280) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2603 (13.6) |
| 2 |
1644 (13.7) |
| 3 |
1618 (10.5) |
| 4 |
1592 (12.3) |
| 5 |
1578 (12.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot