NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
261.8 |
| Mean read quality |
15.2 |
| Median read length |
228.0 |
| Median read quality |
16.4 |
| Number of reads |
57,746.0 |
| Read length N50 |
238.0 |
| STDEV read length |
125.6 |
| Total bases |
15,115,895.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
57746 (100.0%) 15.1Mb |
| >Q7 |
57746 (100.0%) 15.1Mb |
| >Q10 |
57677 (99.9%) 15.1Mb |
| >Q12 |
54268 (94.0%) 13.9Mb |
| >Q15 |
38432 (66.6%) 9.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.9 (174) |
| 2 |
41.7 (192) |
| 3 |
41.3 (256) |
| 4 |
40.7 (185) |
| 5 |
40.0 (212) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4696 (18.7) |
| 2 |
2974 (11.0) |
| 3 |
2619 (15.8) |
| 4 |
2382 (13.3) |
| 5 |
2165 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot