NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
290.4 |
| Mean read quality |
15.1 |
| Median read length |
242.0 |
| Median read quality |
16.2 |
| Number of reads |
1,804.0 |
| Read length N50 |
264.0 |
| STDEV read length |
185.3 |
| Total bases |
523,925.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1804 (100.0%) 0.5Mb |
| >Q7 |
1804 (100.0%) 0.5Mb |
| >Q10 |
1800 (99.8%) 0.5Mb |
| >Q12 |
1698 (94.1%) 0.5Mb |
| >Q15 |
1157 (64.1%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
39.2 (192) |
| 2 |
35.6 (381) |
| 3 |
34.6 (194) |
| 4 |
34.4 (238) |
| 5 |
34.0 (153) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2102 (12.8) |
| 2 |
1817 (13.4) |
| 3 |
1795 (12.3) |
| 4 |
1760 (16.0) |
| 5 |
1646 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot