NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
379.4 |
| Mean read quality |
8.7 |
| Median read length |
341.0 |
| Median read quality |
9.4 |
| Number of reads |
113,677.0 |
| Read length N50 |
369.0 |
| STDEV read length |
156.1 |
| Total bases |
43,129,130.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
113677 (100.0%) 43.1Mb |
| >Q7 |
113677 (100.0%) 43.1Mb |
| >Q10 |
37272 (32.8%) 13.1Mb |
| >Q12 |
2122 (1.9%) 0.7Mb |
| >Q15 |
1 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.0 (346) |
| 2 |
14.8 (409) |
| 3 |
14.5 (308) |
| 4 |
14.4 (279) |
| 5 |
14.4 (233) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6726 (7.8) |
| 2 |
5559 (7.6) |
| 3 |
3954 (7.3) |
| 4 |
3552 (7.6) |
| 5 |
3171 (7.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot