NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
419.3 |
| Mean read quality |
8.1 |
| Median read length |
380.0 |
| Median read quality |
8.5 |
| Number of reads |
48,922.0 |
| Read length N50 |
426.0 |
| STDEV read length |
179.6 |
| Total bases |
20,511,481.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
48922 (100.0%) 20.5Mb |
| >Q7 |
48922 (100.0%) 20.5Mb |
| >Q10 |
8720 (17.8%) 3.1Mb |
| >Q12 |
504 (1.0%) 0.2Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.9 (265) |
| 2 |
14.5 (331) |
| 3 |
14.4 (390) |
| 4 |
14.3 (254) |
| 5 |
14.3 (217) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6691 (7.6) |
| 2 |
3589 (8.0) |
| 3 |
3238 (10.4) |
| 4 |
2963 (8.3) |
| 5 |
2845 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot