NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
312.5 |
| Mean read quality |
8.9 |
| Median read length |
312.0 |
| Median read quality |
9.5 |
| Number of reads |
171,960.0 |
| Read length N50 |
324.0 |
| STDEV read length |
71.7 |
| Total bases |
53,745,732.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
171960 (100.0%) 53.7Mb |
| >Q7 |
171960 (100.0%) 53.7Mb |
| >Q10 |
59998 (34.9%) 18.5Mb |
| >Q12 |
3301 (1.9%) 1.0Mb |
| >Q15 |
1 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.1 (252) |
| 2 |
14.8 (339) |
| 3 |
14.6 (377) |
| 4 |
14.5 (273) |
| 5 |
14.5 (241) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3108 (7.5) |
| 2 |
2916 (7.9) |
| 3 |
2337 (7.5) |
| 4 |
2239 (8.2) |
| 5 |
1991 (7.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot