NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
307.9 |
| Mean read quality |
8.9 |
| Median read length |
298.0 |
| Median read quality |
9.6 |
| Number of reads |
276,278.0 |
| Read length N50 |
314.0 |
| STDEV read length |
71.4 |
| Total bases |
85,076,748.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
276278 (100.0%) 85.1Mb |
| >Q7 |
276278 (100.0%) 85.1Mb |
| >Q10 |
98127 (35.5%) 29.7Mb |
| >Q12 |
4569 (1.7%) 1.3Mb |
| >Q15 |
1 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.1 (290) |
| 2 |
14.6 (273) |
| 3 |
14.6 (281) |
| 4 |
14.6 (246) |
| 5 |
14.5 (206) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3400 (7.6) |
| 2 |
2864 (7.8) |
| 3 |
2774 (7.4) |
| 4 |
2529 (8.3) |
| 5 |
2382 (7.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot