NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,672.8 |
| Mean read quality |
10.3 |
| Median read length |
6,985.0 |
| Median read quality |
11.4 |
| Number of reads |
618,955.0 |
| Read length N50 |
10,647.0 |
| STDEV read length |
5,142.1 |
| Total bases |
4,749,110,746.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
616124 (99.5%) 4730.0Mb |
| >Q7 |
600588 (97.0%) 4620.6Mb |
| >Q10 |
455140 (73.5%) 3515.0Mb |
| >Q12 |
247184 (39.9%) 1903.3Mb |
| >Q15 |
13690 (2.2%) 85.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.5 (4554) |
| 2 |
19.5 (445) |
| 3 |
19.5 (830) |
| 4 |
19.4 (4363) |
| 5 |
19.2 (1156) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
71618 (5.0) |
| 2 |
67706 (11.0) |
| 3 |
59681 (11.8) |
| 4 |
55775 (12.6) |
| 5 |
52903 (7.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot