NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,595.4 |
| Mean read quality |
12.6 |
| Median read length |
1,785.0 |
| Median read quality |
13.7 |
| Number of reads |
564,406.0 |
| Read length N50 |
4,202.0 |
| STDEV read length |
2,525.6 |
| Total bases |
1,464,860,880.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
564402 (100.0%) 1464.9Mb |
| >Q7 |
564371 (100.0%) 1464.9Mb |
| >Q10 |
541638 (96.0%) 1407.5Mb |
| >Q12 |
436923 (77.4%) 1144.7Mb |
| >Q15 |
145455 (25.8%) 351.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.0 (71) |
| 2 |
28.6 (16) |
| 3 |
27.9 (54) |
| 4 |
26.9 (151) |
| 5 |
26.7 (40) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
48908 (15.2) |
| 2 |
35053 (14.1) |
| 3 |
31257 (12.7) |
| 4 |
31069 (11.6) |
| 5 |
30305 (13.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot