NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,490.0 |
| Mean read quality |
12.7 |
| Median read length |
1,713.0 |
| Median read quality |
13.8 |
| Number of reads |
895,485.0 |
| Read length N50 |
4,032.0 |
| STDEV read length |
2,418.6 |
| Total bases |
2,229,756,272.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
895474 (100.0%) 2229.8Mb |
| >Q7 |
895417 (100.0%) 2229.8Mb |
| >Q10 |
861041 (96.2%) 2146.6Mb |
| >Q12 |
694804 (77.6%) 1746.6Mb |
| >Q15 |
232778 (26.0%) 541.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
31.1 (41) |
| 2 |
29.0 (40) |
| 3 |
28.3 (44) |
| 4 |
28.3 (10) |
| 5 |
27.6 (40) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
44868 (12.5) |
| 2 |
39786 (12.9) |
| 3 |
36609 (11.7) |
| 4 |
35268 (9.6) |
| 5 |
34403 (15.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot